Why do you need to rotate Darks? By definition they are to reduce long exposure noise and hot pixel reduction, and as such should not allow any light through to the sensor by having the lens cap on. You can build a library of calibrated darks that can be used with any light frames. In practice only Flat frames require correct orientation with lights.
Edit. I get what you’re trying to do now. Surely any Darks you have taken will be in natural sensor orientation with the Lights, unless you have flipped the Lights by 180 yourself in an editing program or the capture program for Dawn itself. If that’s the case you’ll need an editing program that deals with fits such as Nebulosity, PixInsight etc. There are a few Fits file viewers out there that can also rotate images, I think NASA has one that you can download, or there are a few others I’ve seen.